Section 07: Differential Gene Expression Analysis

Jupyter Notebook by William Mallard (2021), Sreekar Mantena (2020), Verena Wolf (2019), Kevin Mitzes (2018)

Jupyter notebook with examples: [download] [view]

During Friday's section, we will go through the Jupyter notebook. We will discuss RNA-seq experiments and work through a specific example of bounding the FDR via the Benjamini-Hochberg process.

There is also an entirely optional demo (in R) of using edgeR for differential expression analysis, which we will not go through in class.